Download E-books Biological Sequence Analysis Using the SeqAn C++ Library (Chapman & Hall/CRC Mathematical and Computational Biology) PDF

By Andreas Gogol-Döring

An Easy-to-Use learn software for set of rules trying out and Development

Before the SeqAn undertaking, there has been in actual fact a scarcity of obtainable implementations in series research, even for traditional initiatives. Implementations of wanted algorithmic elements have been both unavailable or not easy to entry in third-party monolithic software program items. Addressing those issues, the builders of SeqAn created a complete, easy-to-use, open resource C++ library of effective algorithms and knowledge constructions for the research of organic sequences. Written by way of the founders of this venture, Biological series research utilizing the SeqAn C++ Library covers the SeqAn library, its documentation, and the assisting infrastructure.

The first a part of the e-book describes the final library layout. It introduces organic series research difficulties, discusses the advantage of utilizing software program libraries, summarizes the layout ideas and targets of SeqAn, info the most programming strategies utilized in SeqAn, and demonstrates the applying of those thoughts in a number of examples. targeting the elements supplied by way of SeqAn, the second one half explores simple performance, series information buildings, alignments, development and motif looking, string indices, and graphs. The final half illustrates functions of SeqAn to genome alignment, consensus series in meeting tasks, suffix array development, and more.

This convenient e-book describes a effortless library of effective info varieties and algorithms for series research in computational biology. SeqAn permits not just the implementation of recent algorithms, but additionally the sound research and comparability of latest algorithms.

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